pdb files Search Results


pdb complex file  (Accelrys)
90
Accelrys pdb complex file
Pdb Complex File, supplied by Accelrys, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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starting pdb files for the popc 17,000 atoms system  (Unifi Inc)
90
Unifi Inc starting pdb files for the popc 17,000 atoms system
Starting Pdb Files For The Popc 17,000 Atoms System, supplied by Unifi Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pdb files 2ge4  (Databank Inc)
90
Databank Inc pdb files 2ge4
The comparison of 3D structures of the OmpA in E.coli K12 strain and Shigella flexneri . 1 <t>(1bxw),</t> 2 (1qjp), 3 (2jmm), 4 (2ge4), 5 (1g90), and 6 (3nb3). a The merge and comparison of 3D structures of the OmpA in E.coli K12 strain by the SWISS-MODEL server. b The merge and comparison of the OmpA 3D structure of Shigella flexneri with five 3D structures of the OmpA of E.coli K12 strain. c The similarity of 3D structures of OmpA from the SWISS-MODEL Repository
Pdb Files 2ge4, supplied by Databank Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pdb files 2ge4 - by Bioz Stars, 2026-03
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pdb file  (Brookhaven Instruments)
90
Brookhaven Instruments pdb file
The comparison of 3D structures of the OmpA in E.coli K12 strain and Shigella flexneri . 1 <t>(1bxw),</t> 2 (1qjp), 3 (2jmm), 4 (2ge4), 5 (1g90), and 6 (3nb3). a The merge and comparison of 3D structures of the OmpA in E.coli K12 strain by the SWISS-MODEL server. b The merge and comparison of the OmpA 3D structure of Shigella flexneri with five 3D structures of the OmpA of E.coli K12 strain. c The similarity of 3D structures of OmpA from the SWISS-MODEL Repository
Pdb File, supplied by Brookhaven Instruments, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pdb file - by Bioz Stars, 2026-03
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pdb files  (GenScript corporation)
90
GenScript corporation pdb files
The comparison of 3D structures of the OmpA in E.coli K12 strain and Shigella flexneri . 1 <t>(1bxw),</t> 2 (1qjp), 3 (2jmm), 4 (2ge4), 5 (1g90), and 6 (3nb3). a The merge and comparison of 3D structures of the OmpA in E.coli K12 strain by the SWISS-MODEL server. b The merge and comparison of the OmpA 3D structure of Shigella flexneri with five 3D structures of the OmpA of E.coli K12 strain. c The similarity of 3D structures of OmpA from the SWISS-MODEL Repository
Pdb Files, supplied by GenScript corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pdb files - by Bioz Stars, 2026-03
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protein database (pdb) file 1mis  (Double Helix)
90
Double Helix protein database (pdb) file 1mis
The comparison of 3D structures of the OmpA in E.coli K12 strain and Shigella flexneri . 1 <t>(1bxw),</t> 2 (1qjp), 3 (2jmm), 4 (2ge4), 5 (1g90), and 6 (3nb3). a The merge and comparison of 3D structures of the OmpA in E.coli K12 strain by the SWISS-MODEL server. b The merge and comparison of the OmpA 3D structure of Shigella flexneri with five 3D structures of the OmpA of E.coli K12 strain. c The similarity of 3D structures of OmpA from the SWISS-MODEL Repository
Protein Database (Pdb) File 1mis, supplied by Double Helix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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protein database (pdb) file 1mis - by Bioz Stars, 2026-03
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pdb files  (Databank Inc)
90
Databank Inc pdb files
a Coordination environment extraction from LINK records of <t>PDB</t> <t>files</t> and probability map generation b Site prediction, showing examples for a Zn 2+ binding site, correctly predicted, and unlikely Zn 2+ binding site, discarded in the putative site scoring step because of low probability of the metal site, and an amino acid for which Zn 2+ binding is impossible, discarded in the residue scoring step because of low score of the amino acid.
Pdb Files, supplied by Databank Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pdb files - by Bioz Stars, 2026-03
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load local pdb files vernalis node  (Vernalis Inc)
90
Vernalis Inc load local pdb files vernalis node
a Coordination environment extraction from LINK records of <t>PDB</t> <t>files</t> and probability map generation b Site prediction, showing examples for a Zn 2+ binding site, correctly predicted, and unlikely Zn 2+ binding site, discarded in the putative site scoring step because of low probability of the metal site, and an amino acid for which Zn 2+ binding is impossible, discarded in the residue scoring step because of low score of the amino acid.
Load Local Pdb Files Vernalis Node, supplied by Vernalis Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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load local pdb files vernalis node - by Bioz Stars, 2026-03
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pdb structure files  (AUTODOCK GmbH)
90
AUTODOCK GmbH pdb structure files
a Coordination environment extraction from LINK records of <t>PDB</t> <t>files</t> and probability map generation b Site prediction, showing examples for a Zn 2+ binding site, correctly predicted, and unlikely Zn 2+ binding site, discarded in the putative site scoring step because of low probability of the metal site, and an amino acid for which Zn 2+ binding is impossible, discarded in the residue scoring step because of low score of the amino acid.
Pdb Structure Files, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pdb file  (Mendeley Ltd)
90
Mendeley Ltd pdb file
a Coordination environment extraction from LINK records of <t>PDB</t> <t>files</t> and probability map generation b Site prediction, showing examples for a Zn 2+ binding site, correctly predicted, and unlikely Zn 2+ binding site, discarded in the putative site scoring step because of low probability of the metal site, and an amino acid for which Zn 2+ binding is impossible, discarded in the residue scoring step because of low score of the amino acid.
Pdb File, supplied by Mendeley Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pdb file - by Bioz Stars, 2026-03
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standard pdb files  (Databank Inc)
90
Databank Inc standard pdb files
a Coordination environment extraction from LINK records of <t>PDB</t> <t>files</t> and probability map generation b Site prediction, showing examples for a Zn 2+ binding site, correctly predicted, and unlikely Zn 2+ binding site, discarded in the putative site scoring step because of low probability of the metal site, and an amino acid for which Zn 2+ binding is impossible, discarded in the residue scoring step because of low score of the amino acid.
Standard Pdb Files, supplied by Databank Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pdb files  (Cambridge Crystallographic)
90
Cambridge Crystallographic pdb files
Top 10 citations of <t> PDB </t> structures published in the Journal of Biochemistry
Pdb Files, supplied by Cambridge Crystallographic, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


The comparison of 3D structures of the OmpA in E.coli K12 strain and Shigella flexneri . 1 (1bxw), 2 (1qjp), 3 (2jmm), 4 (2ge4), 5 (1g90), and 6 (3nb3). a The merge and comparison of 3D structures of the OmpA in E.coli K12 strain by the SWISS-MODEL server. b The merge and comparison of the OmpA 3D structure of Shigella flexneri with five 3D structures of the OmpA of E.coli K12 strain. c The similarity of 3D structures of OmpA from the SWISS-MODEL Repository

Journal: BMC Microbiology

Article Title: The OmpA of commensal Escherichia coli of CRC patients affects apoptosis of the HCT116 colon cancer cell line

doi: 10.1186/s12866-022-02540-y

Figure Lengend Snippet: The comparison of 3D structures of the OmpA in E.coli K12 strain and Shigella flexneri . 1 (1bxw), 2 (1qjp), 3 (2jmm), 4 (2ge4), 5 (1g90), and 6 (3nb3). a The merge and comparison of 3D structures of the OmpA in E.coli K12 strain by the SWISS-MODEL server. b The merge and comparison of the OmpA 3D structure of Shigella flexneri with five 3D structures of the OmpA of E.coli K12 strain. c The similarity of 3D structures of OmpA from the SWISS-MODEL Repository

Article Snippet: The 2ge4 [ ], 1g90 [ ], 2jmm [ ], 1qip [ ] and 1bxw [ ] PDB files were obtained from the PDB databank.

Techniques: Comparison

a Coordination environment extraction from LINK records of PDB files and probability map generation b Site prediction, showing examples for a Zn 2+ binding site, correctly predicted, and unlikely Zn 2+ binding site, discarded in the putative site scoring step because of low probability of the metal site, and an amino acid for which Zn 2+ binding is impossible, discarded in the residue scoring step because of low score of the amino acid.

Journal: Nature Communications

Article Title: Metal3D: a general deep learning framework for accurate metal ion location prediction in proteins

doi: 10.1038/s41467-023-37870-6

Figure Lengend Snippet: a Coordination environment extraction from LINK records of PDB files and probability map generation b Site prediction, showing examples for a Zn 2+ binding site, correctly predicted, and unlikely Zn 2+ binding site, discarded in the putative site scoring step because of low probability of the metal site, and an amino acid for which Zn 2+ binding is impossible, discarded in the residue scoring step because of low score of the amino acid.

Article Snippet: The input PDB files for training were obtained from the RCSB protein databank (downloaded 5th March 2021).

Techniques: Extraction, Binding Assay, Residue

Top 10 citations of PDB structures published in the Journal of Biochemistry

Journal: Journal of Biochemistry

Article Title: Fifty years of Protein Data Bank in the Journal of Biochemistry

doi: 10.1093/jb/mvab133

Figure Lengend Snippet: Top 10 citations of PDB structures published in the Journal of Biochemistry

Article Snippet: Duplicated copies of the PDB files were maintained at BNL (USA; master), the Cambridge Crystallographic Data Centre (UK) and Tokyo (Japan) ( ).

Techniques: Binding Assay, Mutagenesis, Activation Assay